GROUP PUBLICATIONS IN 2014

1.Ghada Badr and Arwa Al-Turki. CompPSA: A Component-Based Pairwise RNA Secondary Structure Alignment Algorithm. Poster presentation RECOMB-CG, New york, US, 2014.
2.Ghada Badr and Haifaa Alaqel. Genome Rearrangement for RNA Secondary Structure Using a Component-Based Representation: An Initial Framework. Poster presentation RECOMB-CG, New york, US, 2014.
3.Najlaa AlHuwaishel, Maram AlAlwan and Ghada Badr. Finding the Frequent patterns in a Database: A Study on the Apriori Algorithm. Position Paper in the 6th International Conference on Knowledge Discovery and Information retrieval. Rome, Italy, 21st-24th October, 2014.
4.Hala Alshamlan, Ghada Badr, and Yousef Alohali, The Performance of Bio- Inspired Evolutionary Gene Selection Methods for Cancer Classification Using Microarrays Gene Expression Profile, The International Conference on Communication Systems and Computational intelligence (CCSCI 2014), Toronto, Canada, Jan, 2014.
5.Hala Alshamlan, Ghada Badr, and Yousef Alohali, A Comparative Study of Cancer Classification Methods Using Microarray Gene Expression Profile, The First International Conference on Advanced Data and Information Engineering (DaEng-2013), Kuala Lumpor, Dec. 2013, Malaysia, Lecture Notes in Electrical Engineering (LNEE) 285, Springer Verlag. 2014.
6.Ghada Badr, Isra Al-Turaiki, Marcel Turcotte, and Hassan Mathkour IncMD: Incremental Trie-Based Structural Motif Discovery Algorithm. Accepted for publication in Journal of Bioinformatics and Computational Biology 2014. (ISI: IF - 0.931)
7.Hala Alshamlan, Ghada Badr, and Yousef Alohali,” The Performance of Bio-Inspired Evolutionary Gene Selection Methods for Cancer Classification Using Microarrays Gene Expression Profile”, International Journal of Bioscience, Biochemistry and Bioinformatics (IJBBB), Vol. 4, No. 3, May 2014
8.Isra Al-Turaiki, Ghada Badr, and Hassan Mathkour. TrieAMD: A Scalable and efficient Apriori Motif Discovery Approach. Accepted for publication in International Journal of Data Mining in Bioinformatics 2014. (ISI: IF - 0.681)
9.Al-Jaloud, Ebtisam S., Haifaa A. Al-Aqel, and Ghada H. Badr. "Comparative Performance Evaluation of Heap-Sort and Quick-Sort Algorithms." International Journal of Computing Academic Research (IJCAR), 3 (2): 39-57, April 2014.

GROUP PUBLICATIONS IN 2013

1.Ghada Badr, Isra Al-Turaiki, and Hassan Mathkour. Classification and Assessment Tools for Structural Motif Discovery Algorithms. To appear in BMC Bioinformatics. July, 2013.
2.Isra Al-Turaiki, Ghada Badr, and Hassan Mathkour. TrieAMD: A Scalable and efficient Apriori Motif Discovery Approach. Accepted for publication in International Journal of Data Mining in Bioinformatics 2013.
3.Aljohara Alhassan, Ashwaq Alfawwaz, Ebtesam Alghamdi, Rand Albrahim, Rawabi Alsharif, Ghada Badr. TrieAMDT: A Data Mining Tool for Sequential Motif Discovery. Accepted for poster presentation and is a winner of the annual Research Poster Competition for undergraduate at King Abdullah University of Science and Technology (KAUST), January 2013.
4.Isra Al-Turaiki, Ghada Badr, Marcel Turcotte, and Hassan Mathkour. Incremental Structural Motif Discovery, (short abstract) poster presentation in ISBRA‘13, Charlotte, US, 2013.
5.Hessah Arraqibah and Ghada Badr. Extended Component-Based Motif Localization for Interacting RNA Structures. (short abstract) poster presentation in ISBRA‘13, Charlotte, US, 2013.
6.Hala Alshamlan, Ghada Badr, and Yousef Alohali. A Study for Effective Binary Classification Approaches for Cancer Microarray Gene Expression Profile. (short abstract) (short abstract) poster presentation in ISBRA‘13, Charlotte, US, 2013.
7.Hala Alshamlan, Ghada Badr, and Yousef Alohali. A Study of Cancer Microarray Gene Expression Profile: Objectives and Approaches. World congress in Engineering, the 2013 International Conference of Systems Biology and Bioengineering (ICSBB'13), London, U.K., 3-5 July, 2013.

GROUP PUBLICATIONS IN 2012

1. Isra Al-Turaiki, Ghada Badr, and Hassan Mathkour. TrieAMD: A Scalable and efficient Apriori Motif Discovery Approach. Submitted for publication in Journal of Data Mining in Bioinformatics 2012.
2. Ghada Badr, Isra Al-Turaiki, and Hassan Mathkour. Classification and Assessment Tools for Structural Motif Discovery Algorithms. Accepted for publication in BMC Bioinformatics (2012).
3. Isra Al-Turaiki, Ghada Badr and Hassan Mathkour, Structural Motif Discovery Algorithms: Classification and Benchmarks. (short abstract) Accepted for poster presentation in ISBRA 2012, Dallas, US. (Winner of the best poster award)
4. ISra Al-Turaiki, Ghada Badr, and Hassan Mathkour. Trie-based Apriori Motif Discovery Approach. Accepted for publication and oral presentation in ISBRA 2012.
5. Eman Abdulaziz Al-Helal, Olfat Saleh Al-Harazi, Hanan Abdullah Al-Sayegh, and Ghada Badr. Decision Trees In Data Mining. Accepted for poster presentation in URC 2012, Zayed University, Dubai.
6. Monirah Al-Ajlan, Monirah Al-Gwair, Maha Al-Koueb, Manal Al-Orf, Nada Al-Zahrani, and Ghada Badr. Classification Algorithms Using Decision Trees in Data Mining. Accepted for poster presentation in URC 2012, Zayed University, Dubai.
7. Amna Al-Shayban, Al-Hanouf Al-Dayle, Latifa Al-Masaad, Sarah Al-Romaih, and Ghada Badr. MBA: Market Basket Analyzer. Accepted for poster presentation in URC 2012, Zayed University, Dubai.

Some Selected PUBLICATION FOR FACULTY MEMBER (2009-2012)

1. Badr G. and Turcotte M. Component-Based Matching for Multiple interacting RNA Sequences. In ISBRA 2011, 7th International Symposium on Bioinformatics Research and Applications, Central South University, China, 2011.
2. Swenson, K. M., Badr, G., and Sankoff D. (2010) Listing All Sorting Reversals in Quadratic Time. BMC Algorithms for Molecular Biology 2011.
3. Badr, G, Swenson, K. M., and Sankoff D.. Listing all Parsimonious Reversal Sequences: New Algorithms and Perspectives. Journal of Computational Biology 2011
4. Badr G., Swenson, K. M., Sankoff, D. (2010) Listing all Parsimonious Reversal Sequences: New Algorithms and Perspectives. RECOMB CG, LNCS 6398, Ottawa, Canada, October.
5. Badr G., Swenson, K. M., Sankoff, D. (2010) Listing All Sorting Sequences by Reversals Problem Revisited with a New Framework. WABI Posters, Liverpool, England, September.
6. Swenson, K. M., Badr G., Sankoff, D.. (2010) Listing All Sorting Reversals in Quadratic Time. WABI, LNCS 6293, Liverpool, England, September.
Representation. IEEE WHISPERS 2010, Reykjavik, Iceland, June 2010.
7. Manar Hosny. Vehicle Routing with Pickup and Delivery: Heuristic and Meta-heuristic Solution Algorithms. LAP Lambert Academic Publishing, Germany, 2012. ISBN (978-3-659-20258-2)
8. Manar Hosny. “A Heuristic Algorithm for the Faculty Assignment Problem”. In H. R. Arabnia, V.A. Clincy and L. Deligiannidis, editors, Proceedings of the 2012 Conference on Frontiers in Education: Computer Science and Computer Engineering (FECS'12), Las Vegas, Nevada, USA, Vol. II, pages 566–571, CSREA Press, July 2012
9. Manar I. Hosny and Shameem Fatima. “Facebook in Education: Students, Teachers, and Library Perspectives”. Journal of Computing, Vol. 4, Issue 6, June 2012
10. Manar Hosny. “TACO: An Automatic TAs to Courses Assignment Tool”. In Proceedings of the EdMedia 2012 Conference, Denver, Colorado, USA
18. Hosny, M.I., Mumford, C.L. "Constructing initial solutions for the multiple vehicle pickup and delivery problem with time windows". Journal of King Saud University – Computer and Information Sciences (2012) 24, 59–69
11. Manar Hosny and Shameem Fatima “A Survey of Genetic Algorithms for the University Timetabling Problem”. In International Proceedings of Computer Science and Information Technology, Vol. 13, 2011
20. Manar Hosny. “Heuristic Techniques for the Vehicle Routing Problem with Time Windows”. In International Proceedings of Computer Science and Information Technology, Vol. 13, 2011.
12. M. I. Hosny. “Comparing Genetic Algorithms and Simulated Annealing for Solving the Pickup and Delivery Problem with Time Windows”. In H. R. Arabnia, D. de la Fuente, E. B. Kozerenko, and J. A. Olivas, editors, Proceedings of the 2011 International Conference on Artificial Intelligence, ICAI’11, Las Vegas, Nevada, USA, Vol. II, pages 513–CSREA Press, July 2011
13. Manar I. Hosny and Christine L. Mumford “Solving the One-Commodity Pickup and Delivery Problem Using an Adaptive Hybrid VNS/SA Approach” In Parallel Problem Solving from Nature – PPSN XI, Lecture Notes in Computer Science, Vol. 6293/2011, pages 189-198. DOI: 10.1007/978-3-642-15871-1_20.
14. Manar Hosny. An Adaptive Hybrid Genetic Algorithm- Simulated Annealing Approach: A New Hybridization Technique Applied to Solving the MAP Problem in Bayesian Belief Networks. LAP Lambert Academic Publishing, Germany, 2010, ISBN (978-3-8383-3529-2)
15. Manar I. Hosny and Christine L. Mumford: “An adaptive hybrid VNS/SA approach to the one-commodity pickup and delivery problem”. GECCO (Companion) 2010: 2079-2080
16. Manar I. Hosny and Christine L. Mumford “The Single Vehicle Pickup and Delivery Problem with Time Windows: Intelligent Operators for Heuristic and Metaheuristic Algorithms”. Journal of Heuristics, Special Issue on Recent Advances in Metaheuristics, Vol. 16, No 3, June 2010. DOI:10.1007/s10732-008-9083-1.
17. Manar I. Hosny and Christine L. Mumford “Investigating Genetic Algorithms for Solving the Multiple Vehicle Pickup and Delivery Problem with Time Windows” In MIC2009: Proceedings of the Metaheuristic International Conference, July 2009.
18. Manar I. Hosny and Christine L. Mumford “New Solution Construction Heuristics for the Multiple-Vehicle Pickup and Delivery Problem with Time Windows” In MIC2009: Proceedings of the Metaheuristic International Conference, July 2009
19. H.Benhidour and T. Onisawa, Interactive Learning of Verbal Descriptors' Meaning for Face Drawing System, Journal of Advanced Computational Intelligence and Intelligent Informatics (JACIII), to appear in Vol.14 No.6, 2010.
20. H.Benhidour and T. Onisawa, Interactive learning of linguistic terms meaning for face drawing system , Proceedings of SCIS & ISIS 2008, special session on Applications of Soft Computing to Human Related Problems, pp.1938-1943, September, 2008.
21. Hafida Benhidour, Takehisa Onisawa, Interactive Face Generation from Verbal Description Using Conceptual Fuzzy Sets, Journal of Multimedia, Vol.3, No.2, pp.52-59, June, 2008.
22. H.Benhidour and T. Onisawa, Drawing human faces using words and conceptual fuzzy sets, Proceedings of the IEEE International Conference on Systems, Man and Cybernetics, ISIC, pp.2068-2073, October, 2007.